PUBLICATIONS
2025
“Host metabolism balances microbial regulation of bile acid signalling”
Tae Hyung Won, Mohammad Arifuzzaman, Christopher N. Parkhurst, Isabella C. Miranda, Bingsen Zhang, Elin Hu, Sanchita Kashyap, Jeffrey Letourneau, Wen-Bing Jin, Yousi Fu, Douglas V. Guzior, JRI Live Cell Bank, Robert A. Quinn, Chun-Jun Guo, Lawrence A. David, David Artis, Frank C. Schroeder
Nature, Vol. 638, 2025
Ammara Aqeel, Melissa C. Kay, Jun Zeng, Brianna L. Petrone, Chengxin Yang, Tracy Truong, Covington B. Brown, Sharon Jiang, Veronica M. Carrion, Stephanie Bryant, Michelle C. Kirtley, Cody D. Neshteruk, Sarah C. Armstrong, Lawrence A. David
Obesity, Vol. 33, No. 2, 2025
2024
Jeffrey Letourneau, Benjamin C. Neubert, Diana Dayal, Verónica M. Carrion, Heather K. Durand, Eric P. Dallow, Sharon Jiang, Michelle Kirtley, Geoffrey S. Ginsburg, P. Murali Doraiswamy, and Lawrence A. David
International Journal of Food Sciences and Nutrition, Vol. 75, No. 6, 2024
“Interplay between particle size and microbial ecology in the gut microbiome”
Jeffrey Letourneau, Verónica M Carrion, Jun Zeng, Sharon Jiang, Olivia W Osborne, Zachary C Holmes, Aiden Fox, Piper Epstein, Chin Yee Tan, Michelle Kirtley, Neeraj K Surana, and Lawrence A David
The ISME Journal, Vol. 18, No. 1, 2024
“The Binding Properties of Antibodies to Z-DNA in the Sera of Normal Healthy Subjects”
David S. Pisetsky, Matthew J. Gedye, Lawrence A. David, and Diane M. Spencer
International Journal of Molecular Sciences, Vol. 18, No. 1, 2024
Bailey T. Capra, Summer Hudson, McKenna Helder, Eleni Laskaridou, Aubrey L. Johnson, Carson Gilmore, Elaina Marinik, Valisa E. Hedrick, Jyoti Savla, Lawrence A. David, Kevin P. Davy, and Brenda M. Davy
Contemporary Clinical Trials, No. 137, 2024
“A pilot study of fecal pH and redox as functional markers in the premature infant gut microbiome”
Jeffrey Letourneau, LaShawndra Walker, Se Hyang Han, Lawrence A. David, andNoelle Younge
PLOS ONE, Vol. 19, No. 1, 2024
2023
Lauren E. Davey, Per N. Malkus, Max Villa, Lee Dolat, Zachary C. Holmes, Jeff Letourneau, Eduard Ansaldo, Lawrence A. David, Gregory M. Barton, and Raphael H. Valdivia
Nature Microbiology, Vol. 8, No. 8, 2023
“Diversity of plant DNA in stool is linked to dietary quality, age, and household income”
Brianna L. Petrone, Ammara Aqeel, Sharon Jiang, Heather K. Durand, Eric P. Dallow, Jessica R. McCann, Holly K. Dressman, Zhengzheng Hu, Christine B. Tenekjian, William S. Yancy Jr., Pao-Hwa Lin, Julia J. Scialla, Patrick C. Seed, John F. Rawls, Sarah C. Armstrong, June Stevens, and Lawrence A. David
PNAS, Vol. 120, No. 27, 2023
2022
Zachary C. Holmes, Helen Tang, Congxiao Liu, Amy Bush, Benjamin C. Neubert, Yiqun Jiao, Megan Covington, Diana M. Cardona, Michelle C. Kirtley, Benny J. Chen, Nelson J. Chao, Lawrence A. David, and Anthony D. Sung
Blood, American Society of Hematology, Vol. 140, No. 1 21, 2022
“Ecological memory of prior nutrient exposure in the human gut microbiome”
Jeffrey Letourneau, Zachary C Holmes, Eric P Dallow, Heather K Durand, Sharon Jiang, Verónica M Carrion, Savita K Gupta, Adam C Mincey, Michael J Muehlbauer, James R Bain, and Lawrence A David
The ISME Journal, Vol. 16, No. 11, 2022
"Horizontal gene transfer enables programmable gene stability in synthetic microbiota”
Teng Wang, Andrea Weiss, Ammara Aqeel, Feilun Wu, Allison J. Lopatkin, Lawrence A. David, and Lingchong You
Nature Chemical Biology, Vol. 18, No. 11, 2022
Zachary C. Holmes, Max M. Villa, Heather K. Durand, Sharon Jiang, Eric P. Dallow, Brianna L. Petrone, Justin D. Silverman, Pao-Hwa Lin, and Lawrence A. David
Microbiome, No. 10, 2022
“Modulation of microbial community dynamics by spatial partitioning”
Feilun Wu, Yuanchi Ha, Andrea Weiss, Meidi Wang, Jeffrey Letourneau, Shangying Wang, Nan Luo, Shuquan Huang, Charlotte T. Lee, Lawrence A. David, and Lingchong You
Nature Chemical Biology, Vol. 18, No. 4, 2022
“Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes”
Catherine A. Pfister, Samuel H. Light, Brendan Bohannan, Thomas Schmidt, Adam Martiny, Nicole A. Hynson, Suzanne Devkota, Lawrence David, and Katrine Whiteson
mSystems (ASM Journals), Vol. 7, No. 1, 2022
“Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes”
Justin D. Silverman, Kimberly Roche, Zachary C. Holmes, Lawrence A. David, and Sayan Mukherjee
Journal of Machine Learning Research, Vol. 23, 2022
Firas S. Midani and Lawrence A. David
Frontiers in Microbiology, Vol. 13, 2022
2021
“Measuring and mitigating PCR bias in microbiota datasets”
Justin D. Silverman, Rachael J. Bloom, Sharon Jiang, Heather K. Durand, Eric Dallow, Sayan Mukherjee, and Lawrence A. David
PLoS Computational Biology, Vol. 17, No. 7, 2021
“Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila”
Bradford Becken, Lauren Davey, Dustin R. Middleton, Katherine D. Mueller, Agastya Sharma, Zachary C. Holmes, Eric Dallow, Brenna Remick, Gregory M. Barton, Lawrence A. David, Jessica R. McCann, Sarah C. Armstrong, Per Malkus, and Raphael H. Valdivia
mBio (ASM Journals), Vol. 12, No. 3, 2021
Jessica R. McCann, Nathan A. Bihlmeyer, Kimberly Roche, Cameron Catherine, Jayanth Jawahar, Lydia Coulter Kwee, Noelle E. Younge, Justin Silverman, Olga Ilkayeva, Charles Sarria, Alexandra Zizzi, Janet Wootton, Lisa Poppe, Paul Anderson, Michelle Arlotto, Zhengzheng Wei, Joshua A. Granek, Raphael H. Valdivia, Lawrence A. David, Holly K. Dressman, Christopher B. Newgard, Svati H. Shah, Patrick C. Seed, John F. Rawls, and Sarah C. Armstrong
Obesity, Vol. 29, No. 3, 2021
Inès Levade, Morteza M Saber, Firas S Midani, Fahima Chowdhury, Ashraful I Khan, Yasmin A Begum, Edward T Ryan, Lawrence A David, Stephen B Calderwood, Jason B Harris, Regina C LaRocque, Firdausi Qadri, B Jesse Shapiro, and Ana A Weil
Journal of Infectious Diseases, Vol. 223, No. 2, 2021
“Individual Variation in Prebiotic Response”
Lawrence A. David, Zachary C. Holme1, Max M. Villa, Heather K. Durand, Sharon Jiang, Eric P. Dallow, Brianna L. Petrone, Justin D. Silverman, and Pao-Hwa Lin
In Vitro Cellular & Developmental Biology, Vol. 57, No. 1, 2021
2020
“Conserved anti-inflammatory effects and sensing of butyrate in zebrafish”
Pradeep Manuneedhi Cholan, Alvin Han, Brad R Woodie, Maxinne Watchon, Angela RM Kurz, Angela S Laird, Warwick J Britton, Lihua Ye, Zachary C Holmes, Jessica R McCann, Lawrence A David, John F Rawls, and Stefan H Oehlers
Gut Microbes, Vol. 20, No. 1, 2020
Zachary C. Holmes, Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah C. Armstrong, Patrick C. Seed, John F. Rawls, and Lawrence A. David
mBio (ASM Journals), Vol. 11, No. 4, 2020
Max M. Villa, Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu, Eric P. Dallow, Shuqiang Huang, Lingchong You, and Lawrence A. David
mSystems (ASM Journals), Vol. 5, No. 3, 2020
“The emergence of microbiome centres”
Jennifer B. H. Martiny, Katrine L. Whiteson, Brendan J. M. Bohannan, Lawrence A. David, Nicole A. Hynson, Margaret McFall-Ngai, John F. Rawls, Thomas M. Schmidt, Zaid Abdo, Martin J. Blaser, Seth Bordenstein, Christian Bréchot, Carolee T. Bull, Pieter Dorrestein, Jonathan A. Eisen, Ferran Garcia-Pichel, Jack Gilbert, Kirsten S. Hofmockel, Mary L. Holtz, Rob Knight, David B. Mark Welch, Daniel McDonald, Barbara Methé, Nigel J. Mouncey, Noel T. Mueller, Catherine A. Pfister, Lita Proctor, and Joel L. Sachs
Nature Microbiology, Vol. 5, No. 1, 2020
“Naught all zeros in sequence count data are the same”
Justin D. Silverman, Kimberly Roche, Sayan Mukherjee, and Lawrence A. David
Computational and Structural Biotechnology Journal, Vol. 18, 2020
2019
“Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept”
Aspen T. Reese, Tyler R. Kartzinel, Brianna L. Petrone, Peter J. Turnbaugh, Robert M. Pringle, Lawrence A. David
mSystems (ASM Journals), Vol. 4, No. 5, 2019
Alex D. Washburne, Justin D. Silverman, James T. Morton, Daniel J. Becker, Daniel Crowley, Sayan Mukherjee, Lawrence A. David, Raina K. Plowright"
Ecological Monographs, Vol. 89, No. 2, 2019
2018
“Microbial nitrogen limitation in the mammalian large intestine”
Aspen T. Reese, Fátima C. Pereira, Arno Schintlmeister, David Berry, Michael Wagner, Laura P. Hale, Anchi Wu, Sharon Jiang, Heather K. Durand, Xiyou Zhou, Richard T. Premont, Anna Mae Diehl, Thomas M. O’Connell, Susan C. Alberts, Tyler R. Kartzinel, Robert M. Pringle, Robert R. Dunn, Justin P. Wright & Lawrence A. David
Nature Microbiology, Vol. 3, No. 12, 2018
“Dynamic linear models guide design and analysis of microbiota studies within artificial human guts”
Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Microbiome, Vol. 6, No. 1, 2018
“Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection”
Firas S. Midani, Ana A. Weil, Fahima Chowdhury, Yasmin A. Begum, Ashraful I Khan, Meti D. Debela, Heather K. Durand, Aspen T. Reese, Sai N. Nimmagadda, Justin D. Silverman, Crystal N. Ellis, Edward T. Ryan, Stephen B. Calderwood, Jason B. Harris, Firdausi Qadri, Lawrence A. David, Regina C. LaRocque
Journal of Infectious Diseases, Vol. 218, No. 4, 2018
“Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut”
Aspen T. Reese, Eugenia H. Cho, Bruce Klitzman, Scott P. Nichols, Natalie A. Wisniewski, Max M. Villa, Heather K. Durand, Sharon Jiang, Firas S. Midani, Sai N. Nimmagadda, Thomas M. O'Connell, Justin P. Wright, Marc A. Deshusses, Lawrence A. David
eLife, Vol. 7, 2018
Aspen T. Reese, Kyrstin Lulow, Lawrence A. David, Justin P. Wright
Ecology and Evolution, Vol. 8, No. 2, 2018
“Toward Personalized Control of Human Gut Bacterial Communities”
Aspen T. Reese, Kyrstin Lulow, Lawrence A. David, Justin P. Wright
mSystems (ASM Journals), Vol. 3, No. 2, 2018